Bio3D-web is a new online application, built on top of the Bio3D package, for the user friendly investigation of protein structure ensembles.
Major functionality allows you to map and explore the structural, conformational and internal dynamic properties of proteins for which there are high resolution structures available. Read More >>
Bio3D-web provides a rapid and rigorous tool for the identification and comparative analysis of protein structures for a users protein family of choice. Methods include a range of conventional sequence and structure conservation assessment methods, as well as inter-conformer characterization with principal component analysis (PCA) and ensemble normal mode analysis (eNMA) for comparison of predicted flexibilities and major structural displacements.
Bio3D-NMAweb provides conventional single protein structure normal mode analysis. Options include a wide range of popular elastic network models (ENMs), as well as enhanced analyses including residue fluctuations, mode visualization, dynamic cross-correlations, and overlap analysis.
