Installing Bio3D Detailed instructions for installing Bio3D with required libraries and suggested packages.
Getting started Hands on introduction to Bio3D for new users of the R environment.
Beginning structure analysis Explore, analyze and manipulate PDB structures.
Trajectory analysis Task-oriented introduction to basic molecular dynamics (MD) trajectory analysis.
Principal component analysis Introduction to principal component analysis (PCA) of multiple PDB structures.
Normal modes analysis Worked examples of single structure normal modes analysis (NMA).
Ensemble normal mode analysis I Performing NMA on heterogenous multiple structure sets - part 1.
Ensemble normal mode analysis II Performing NMA on heterogenous multiple structure sets - part 2.
Protein structure network analysis Detailed introduction to correlation network analysis from both MD and NMA.
Biomolecular structure visualization Introduction to interactive 3D structure visualization with Bio3D.



Bio3D Install

Installing Bio3D


Beginning Structure Analysis

Beginning Trajectory Analysis

Comparative sequence and structure analysis

Introduction to correlation network analysis


Normal mode analysis