Tutorials

Written by Lars Skjærven. Posted in Static content

Installing Bio3D	Detailed instructions for installing Bio3D with required libraries and suggested packages.
Getting started	Hands on introduction to Bio3D for new users of the R environment.
Beginning structure analysis	Explore, analyze and manipulate PDB structures.
Trajectory analysis	Task-oriented introduction to basic molecular dynamics (MD) trajectory analysis.
Principal component analysis	Introduction to principal component analysis (PCA) of multiple PDB structures.
Normal modes analysis	Worked examples of single structure normal modes analysis (NMA).
Ensemble normal mode analysis I	Performing NMA on heterogenous multiple structure sets - part 1.
Ensemble normal mode analysis II	Performing NMA on heterogenous multiple structure sets - part 2.
Protein structure network analysis	Detailed introduction to correlation network analysis from both MD and NMA.
Biomolecular structure visualization	Introduction to interactive 3D structure visualization with Bio3D.