Obtain An SSE Sequence Vector From A PDB Object

Usage

pdb2sse(pdb, verbose = TRUE)

Arguments

pdb
an object of class pdb as obtained from function read.pdb.
verbose
logical, if TRUE warnings and other messages will be printed.

Value

a character vector indicating SSE elements for each amino acide residue. The 'names' attribute of the vector contains 'resno', 'chain', 'insert', and 'SSE segment number', seperated by the character '_'.

Description

Results are similar to that returned by stride(pdb)$sse and dssp(pdb)$sse.

Details

call for its effects.

Examples

#PDB server connection required - testing excluded pdb <- read.pdb("1a7l")
Note: Accessing on-line PDB file
sse <- pdb2sse(pdb) sse
4_A_NA 5_A_NA 6_A_NA 7_A_NA_1 8_A_NA_1 9_A_NA_1 " " " " " " "E" "E" "E" 10_A_NA_1 11_A_NA 12_A_NA 13_A_NA 14_A_NA 15_A_NA "E" " " " " " " " " " " 16_A_NA 17_A_NA_1 18_A_NA_1 19_A_NA_1 20_A_NA_1 21_A_NA_1 " " "H" "H" "H" "H" "H" 22_A_NA_1 23_A_NA_1 24_A_NA_1 25_A_NA_1 26_A_NA_1 27_A_NA_1 "H" "H" "H" "H" "H" "H" 28_A_NA_1 29_A_NA_1 30_A_NA_1 31_A_NA_1 32_A_NA 33_A_NA "H" "H" "H" "H" " " " " 34_A_NA 35_A_NA_2 36_A_NA_2 37_A_NA_2 38_A_NA_2 39_A_NA " " "E" "E" "E" "E" " " 40_A_NA 41_A_NA 42_A_NA 43_A_NA_2 44_A_NA_2 45_A_NA_2 " " " " " " "H" "H" "H" 46_A_NA_2 47_A_NA_2 48_A_NA_2 49_A_NA_2 50_A_NA_2 51_A_NA_2 "H" "H" "H" "H" "H" "H" 52_A_NA_2 53_A_NA_2 54_A_NA 55_A_NA 56_A_NA 57_A_NA "H" "H" " " " " " " " " 58_A_NA 59_A_NA_3 60_A_NA_3 61_A_NA_3 62_A_NA_3 63_A_NA_3 " " "E" "E" "E" "E" "E" 64_A_NA_3 65_A_NA_3 66_A_NA_3 67_A_NA_3 68_A_NA_3 69_A_NA_3 "H" "H" "H" "H" "H" "H" 70_A_NA_3 71_A_NA_3 72_A_NA_3 73_A_NA 74_A_NA 75_A_NA "H" "H" "H" " " " " " " 76_A_NA 77_A_NA 78_A_NA 79_A_NA 80_A_NA 81_A_NA " " " " " " " " " " " " 82_A_NA 83_A_NA_4 84_A_NA_4 85_A_NA_4 86_A_NA_4 87_A_NA_4 " " "H" "H" "H" "H" "H" 88_A_NA_4 89_A_NA 90_A_NA 91_A_NA_5 92_A_NA_5 93_A_NA_5 "H" " " " " "H" "H" "H" 94_A_NA_5 95_A_NA_5 96_A_NA_5 97_A_NA_5 98_A_NA 99_A_NA "H" "H" "H" "H" " " " " 100_A_NA 101_A_NA 102_A_NA 103_A_NA 104_A_NA 105_A_NA " " " " " " " " " " " " 106_A_NA_5 107_A_NA_5 108_A_NA_5 109_A_NA_5 110_A_NA_5 111_A_NA_5 "E" "E" "E" "E" "E" "E" 112_A_NA 113_A_NA 114_A_NA_7 115_A_NA_7 116_A_NA_7 117_A_NA_7 " " " " "E" "E" "E" "E" 118_A_NA_7 119_A_NA 120_A_NA 121_A_NA 122_A_NA 123_A_NA "E" " " " " " " " " " " 124_A_NA 125_A_NA 126_A_NA 127_A_NA 128_A_NA 129_A_NA " " " " " " " " " " " " 130_A_NA 131_A_NA 132_A_NA_6 133_A_NA_6 134_A_NA_6 135_A_NA_6 " " " " "H" "H" "H" "H" 136_A_NA_6 137_A_NA_6 138_A_NA_6 139_A_NA_6 140_A_NA_6 141_A_NA_6 "H" "H" "H" "H" "H" "H" 142_A_NA_6 143_A_NA 144_A_NA 145_A_NA 146_A_NA 147_A_NA "H" " " " " " " " " " " 148_A_NA 149_A_NA 150_A_NA 151_A_NA 152_A_NA 153_A_NA " " " " " " " " " " " " 154_A_NA_7 155_A_NA_7 156_A_NA_7 157_A_NA_7 158_A_NA_7 159_A_NA_7 "H" "H" "H" "H" "H" "H" 160_A_NA_7 161_A_NA_7 162_A_NA_7 163_A_NA_7 164_A_NA 165_A_NA "H" "H" "H" "H" " " " " 166_A_NA 167_A_NA 168_A_NA 169_A_NA 170_A_NA 171_A_NA " " " " " " " " " " " " 172_A_NA 173_A_NA 174_A_NA 175_A_NA 176_A_NA 177_A_NA " " " " " " " " " " " " 178_A_NA 179_A_NA 180_A_NA 181_A_NA 182_A_NA 183_A_NA " " " " " " " " " " " " 184_A_NA 185_A_NA 186_A_NA_8 187_A_NA_8 188_A_NA_8 189_A_NA_8 " " " " "H" "H" "H" "H" 190_A_NA_8 191_A_NA_8 192_A_NA_8 193_A_NA_8 194_A_NA_8 195_A_NA_8 "H" "H" "H" "H" "H" "H" 196_A_NA_8 197_A_NA_8 198_A_NA_8 199_A_NA_8 200_A_NA_8 201_A_NA "H" "H" "H" "H" "H" " " 202_A_NA 203_A_NA 204_A_NA 205_A_NA 206_A_NA 207_A_NA " " " " " " " " " " " " 208_A_NA 209_A_NA 210_A_NA_9 211_A_NA_9 212_A_NA_9 213_A_NA_9 " " " " "H" "H" "H" "H" 214_A_NA_9 215_A_NA_9 216_A_NA_9 217_A_NA_9 218_A_NA_9 219_A_NA "H" "H" "H" "H" "H" " " 220_A_NA 221_A_NA 222_A_NA 223_A_NA 224_A_NA_6 225_A_NA_6 " " " " " " " " "E" "E" 226_A_NA_6 227_A_NA_6 228_A_NA 229_A_NA_10 230_A_NA_10 231_A_NA_10 "E" "E" " " "H" "H" "H" 232_A_NA_10 233_A_NA_10 234_A_NA_10 235_A_NA_10 236_A_NA_10 237_A_NA_10 "H" "H" "H" "H" "H" "H" 238_A_NA_10 239_A_NA 240_A_NA 241_A_NA 242_A_NA_8 243_A_NA_8 "H" " " " " " " "E" "E" 244_A_NA_8 245_A_NA_8 246_A_NA 247_A_NA 248_A_NA 249_A_NA "E" "E" " " " " " " " " 250_A_NA 251_A_NA 252_A_NA 253_A_NA 254_A_NA 255_A_NA " " " " " " " " " " " " 256_A_NA 257_A_NA 258_A_NA 259_A_NA 260_A_NA_4 261_A_NA_4 " " " " " " " " "E" "E" 262_A_NA_4 263_A_NA_4 264_A_NA_4 265_A_NA_4 266_A_NA_4 267_A_NA "E" "E" "E" "E" "E" " " 268_A_NA 269_A_NA 270_A_NA 271_A_NA 272_A_NA 273_A_NA_11 " " " " " " " " " " "H" 274_A_NA_11 275_A_NA_11 276_A_NA_11 277_A_NA_11 278_A_NA_11 279_A_NA_11 "H" "H" "H" "H" "H" "H" 280_A_NA_11 281_A_NA_11 282_A_NA_11 283_A_NA 284_A_NA 285_A_NA "H" "H" "H" " " " " " " 286_A_NA 287_A_NA_12 288_A_NA_12 289_A_NA_12 290_A_NA_12 291_A_NA_12 " " "H" "H" "H" "H" "H" 292_A_NA_12 293_A_NA_12 294_A_NA_12 295_A_NA_12 296_A_NA_12 297_A_NA "H" "H" "H" "H" "H" " " 298_A_NA 299_A_NA 300_A_NA 301_A_NA 302_A_NA 303_A_NA " " " " " " " " " " " " 304_A_NA 305_A_NA_13 306_A_NA_13 307_A_NA_13 308_A_NA_13 309_A_NA_13 " " "H" "H" "H" "H" "H" 310_A_NA_13 311_A_NA_13 312_A_NA_13 313_A_NA_13 314_A_NA 315_A_NA_14 "H" "H" "H" "H" " " "H" 316_A_NA_14 317_A_NA_14 318_A_NA_14 319_A_NA_14 320_A_NA_14 321_A_NA_14 "H" "H" "H" "H" "H" "H" 322_A_NA_14 323_A_NA_14 324_A_NA_14 325_A_NA_14 326_A_NA_14 327_A_NA "H" "H" "H" "H" "H" " " 328_A_NA 329_A_NA 330_A_NA 331_A_NA 332_A_NA 333_A_NA " " " " " " " " " " " " 334_A_NA_15 335_A_NA_15 336_A_NA_15 337_A_NA_15 338_A_NA_15 339_A_NA_15 "H" "H" "H" "H" "H" "H" 340_A_NA_15 341_A_NA_15 342_A_NA_15 343_A_NA_15 344_A_NA_15 345_A_NA_15 "H" "H" "H" "H" "H" "H" 346_A_NA_15 347_A_NA_15 348_A_NA_15 349_A_NA_15 350_A_NA_15 351_A_NA_15 "H" "H" "H" "H" "H" "H" 352_A_NA 353_A_NA 354_A_NA 355_A_NA 356_A_NA 357_A_NA_16 " " " " " " " " " " "H" 358_A_NA_16 359_A_NA_16 360_A_NA_16 361_A_NA_16 362_A_NA_16 363_A_NA_16 "H" "H" "H" "H" "H" "H" 364_A_I_16 365_A_I_16 132_A_E 133_A_E 134_A_E_17 135_A_E_17 "H" "H" " " " " "H" "H" 136_A_E_17 137_A_E_17 138_A_E 139_A_E 140_A_E 141_A_E "H" "H" " " " " " " " " 142_A_E 143_A_E 144_A_E 145_A_E 380_A_I 381_A_I " " " " " " " " " " " " 382_A_I 383_A_I 4_B_NA 5_B_NA 6_B_NA_9 7_B_NA_9 " " " " " " " " "E" "E" 8_B_NA_9 9_B_NA_9 10_B_NA_9 11_B_NA 12_B_NA 13_B_NA "E" "E" "E" " " " " " " 14_B_NA 15_B_NA 16_B_NA 17_B_NA_18 18_B_NA_18 19_B_NA_18 " " " " " " "H" "H" "H" 20_B_NA_18 21_B_NA_18 22_B_NA_18 23_B_NA_18 24_B_NA_18 25_B_NA_18 "H" "H" "H" "H" "H" "H" 26_B_NA_18 27_B_NA_18 28_B_NA_18 29_B_NA_18 30_B_NA_18 31_B_NA_18 "H" "H" "H" "H" "H" "H" 32_B_NA 33_B_NA 34_B_NA_10 35_B_NA_10 36_B_NA_10 37_B_NA_10 " " " " "E" "E" "E" "E" 38_B_NA_10 39_B_NA 40_B_NA 41_B_NA 42_B_NA 43_B_NA_19 "E" " " " " " " " " "H" 44_B_NA_19 45_B_NA_19 46_B_NA_19 47_B_NA_19 48_B_NA_19 49_B_NA_19 "H" "H" "H" "H" "H" "H" 50_B_NA_19 51_B_NA 52_B_NA 53_B_NA 54_B_NA 55_B_NA "H" " " " " " " " " " " 56_B_NA 57_B_NA 58_B_NA 59_B_NA_11 60_B_NA_11 61_B_NA_11 " " " " " " "E" "E" "E" 62_B_NA_11 63_B_NA_11 64_B_NA_20 65_B_NA_20 66_B_NA_20 67_B_NA_20 "E" "E" "H" "H" "H" "H" 68_B_NA_20 69_B_NA_20 70_B_NA_20 71_B_NA_20 72_B_NA_20 73_B_NA_20 "H" "H" "H" "H" "H" "H" 74_B_NA 75_B_NA 76_B_NA 77_B_NA 78_B_NA 79_B_NA " " " " " " " " " " " " 80_B_NA 81_B_NA 82_B_NA 83_B_NA_21 84_B_NA_21 85_B_NA_21 " " " " " " "H" "H" "H" 86_B_NA_21 87_B_NA_21 88_B_NA_21 89_B_NA 90_B_NA 91_B_NA_22 "H" "H" "H" " " " " "H" 92_B_NA_22 93_B_NA_22 94_B_NA_22 95_B_NA_22 96_B_NA_22 97_B_NA_22 "H" "H" "H" "H" "H" "H" 98_B_NA 99_B_NA 100_B_NA 101_B_NA 102_B_NA 103_B_NA " " " " " " " " " " " " 104_B_NA 105_B_NA 106_B_NA_13 107_B_NA_13 108_B_NA_13 109_B_NA_13 " " " " "E" "E" "E" "E" 110_B_NA_13 111_B_NA_13 112_B_NA 113_B_NA 114_B_NA_15 115_B_NA_15 "E" "E" " " " " "E" "E" 116_B_NA_15 117_B_NA_15 118_B_NA_15 119_B_NA 120_B_NA 121_B_NA "E" "E" "E" " " " " " " 122_B_NA 123_B_NA 124_B_NA 125_B_NA 126_B_NA 127_B_NA " " " " " " " " " " " " 128_B_NA 129_B_NA 130_B_NA 131_B_NA 132_B_NA_23 133_B_NA_23 " " " " " " " " "H" "H" 134_B_NA_23 135_B_NA_23 136_B_NA_23 137_B_NA_23 138_B_NA_23 139_B_NA_23 "H" "H" "H" "H" "H" "H" 140_B_NA_23 141_B_NA_23 142_B_NA_23 143_B_NA 144_B_NA 145_B_NA "H" "H" "H" " " " " " " 146_B_NA 147_B_NA 148_B_NA 149_B_NA 150_B_NA 151_B_NA " " " " " " " " " " " " 152_B_NA 153_B_NA 154_B_NA_24 155_B_NA_24 156_B_NA_24 157_B_NA_24 " " " " "H" "H" "H" "H" 158_B_NA_24 159_B_NA_24 160_B_NA_24 161_B_NA_24 162_B_NA_24 163_B_NA_24 "H" "H" "H" "H" "H" "H" 164_B_NA 165_B_NA 166_B_NA 167_B_NA 168_B_NA 169_B_NA " " " " " " " " " " " " 170_B_NA 171_B_NA 172_B_NA 173_B_NA 174_B_NA 175_B_NA " " " " " " " " " " " " 176_B_NA 177_B_NA 178_B_NA 179_B_NA 180_B_NA 181_B_NA " " " " " " " " " " " " 182_B_NA 183_B_NA 184_B_NA 185_B_NA 186_B_NA_25 187_B_NA_25 " " " " " " " " "H" "H" 188_B_NA_25 189_B_NA_25 190_B_NA_25 191_B_NA_25 192_B_NA_25 193_B_NA_25 "H" "H" "H" "H" "H" "H" 194_B_NA_25 195_B_NA_25 196_B_NA_25 197_B_NA_25 198_B_NA_25 199_B_NA_25 "H" "H" "H" "H" "H" "H" 200_B_NA_25 201_B_NA 202_B_NA 203_B_NA 204_B_NA 205_B_NA "H" " " " " " " " " " " 206_B_NA 207_B_NA 208_B_NA 209_B_NA 210_B_NA_26 211_B_NA_26 " " " " " " " " "H" "H" 212_B_NA_26 213_B_NA_26 214_B_NA_26 215_B_NA_26 216_B_NA_26 217_B_NA_26 "H" "H" "H" "H" "H" "H" 218_B_NA_26 219_B_NA_26 220_B_NA 221_B_NA 222_B_NA 223_B_NA "H" "H" " " " " " " " " 224_B_NA_14 225_B_NA_14 226_B_NA_14 227_B_NA_14 228_B_NA 229_B_NA_27 "E" "E" "E" "E" " " "H" 230_B_NA_27 231_B_NA_27 232_B_NA_27 233_B_NA_27 234_B_NA_27 235_B_NA_27 "H" "H" "H" "H" "H" "H" 236_B_NA_27 237_B_NA_27 238_B_NA_27 239_B_NA 240_B_NA 241_B_NA "H" "H" "H" " " " " " " 242_B_NA_16 243_B_NA_16 244_B_NA_16 245_B_NA_16 246_B_NA 247_B_NA "E" "E" "E" "E" " " " " 248_B_NA 249_B_NA 250_B_NA 251_B_NA 252_B_NA 253_B_NA " " " " " " " " " " " " 254_B_NA 255_B_NA 256_B_NA 257_B_NA 258_B_NA 259_B_NA " " " " " " " " " " " " 260_B_NA_12 261_B_NA_12 262_B_NA_12 263_B_NA_12 264_B_NA_12 265_B_NA_12 "E" "E" "E" "E" "E" "E" 266_B_NA_12 267_B_NA 268_B_NA 269_B_NA 270_B_NA 271_B_NA "E" " " " " " " " " " " 272_B_NA 273_B_NA_28 274_B_NA_28 275_B_NA_28 276_B_NA_28 277_B_NA_28 " " "H" "H" "H" "H" "H" 278_B_NA_28 279_B_NA_28 280_B_NA_28 281_B_NA_28 282_B_NA_28 283_B_NA "H" "H" "H" "H" "H" " " 284_B_NA 285_B_NA 286_B_NA 287_B_NA_29 288_B_NA_29 289_B_NA_29 " " " " " " "H" "H" "H" 290_B_NA_29 291_B_NA_29 292_B_NA_29 293_B_NA_29 294_B_NA_29 295_B_NA_29 "H" "H" "H" "H" "H" "H" 296_B_NA_29 297_B_NA 298_B_NA 299_B_NA 300_B_NA 301_B_NA "H" " " " " " " " " " " 302_B_NA 303_B_NA 304_B_NA 305_B_NA_30 306_B_NA_30 307_B_NA_30 " " " " " " "H" "H" "H" 308_B_NA_30 309_B_NA_30 310_B_NA_30 311_B_NA_30 312_B_NA_30 313_B_NA_30 "H" "H" "H" "H" "H" "H" 314_B_NA 315_B_NA_31 316_B_NA_31 317_B_NA_31 318_B_NA_31 319_B_NA_31 " " "H" "H" "H" "H" "H" 320_B_NA_31 321_B_NA_31 322_B_NA_31 323_B_NA_31 324_B_NA_31 325_B_NA_31 "H" "H" "H" "H" "H" "H" 326_B_NA_31 327_B_NA 328_B_NA 329_B_NA 330_B_NA 331_B_NA "H" " " " " " " " " " " 332_B_NA 333_B_NA 334_B_NA_32 335_B_NA_32 336_B_NA_32 337_B_NA_32 " " " " "H" "H" "H" "H" 338_B_NA_32 339_B_NA_32 340_B_NA_32 341_B_NA_32 342_B_NA_32 343_B_NA_32 "H" "H" "H" "H" "H" "H" 344_B_NA_32 345_B_NA_32 346_B_NA_32 347_B_NA_32 348_B_NA_32 349_B_NA_32 "H" "H" "H" "H" "H" "H" 350_B_NA_32 351_B_NA_32 352_B_NA 353_B_NA 354_B_NA 355_B_NA "H" "H" " " " " " " " " 356_B_NA 357_B_NA_33 358_B_NA_33 359_B_NA_33 360_B_NA_33 361_B_NA_33 " " "H" "H" "H" "H" "H" 362_B_NA_33 363_B_NA_33 364_B_I_33 365_B_I_33 132_B_E_33 133_B_E "H" "H" "H" "H" "H" " " 134_B_E 135_B_E 136_B_E 137_B_E 138_B_E 139_B_E " " " " " " " " " " " " 140_B_E 141_B_E 4_C_NA 5_C_NA 6_C_NA 7_C_NA_17 " " " " " " " " " " "E" 8_C_NA_17 9_C_NA_17 10_C_NA_17 11_C_NA 12_C_NA 13_C_NA "E" "E" "E" " " " " " " 14_C_NA 15_C_NA 16_C_NA 17_C_NA_34 18_C_NA_34 19_C_NA_34 " " " " " " "H" "H" "H" 20_C_NA_34 21_C_NA_34 22_C_NA_34 23_C_NA_34 24_C_NA_34 25_C_NA_34 "H" "H" "H" "H" "H" "H" 26_C_NA_34 27_C_NA_34 28_C_NA_34 29_C_NA_34 30_C_NA_34 31_C_NA_34 "H" "H" "H" "H" "H" "H" 32_C_NA 33_C_NA 34_C_NA 35_C_NA_18 36_C_NA_18 37_C_NA_18 " " " " " " "E" "E" "E" 38_C_NA_18 39_C_NA 40_C_NA 41_C_NA 42_C_NA 43_C_NA_35 "E" " " " " " " " " "H" 44_C_NA_35 45_C_NA_35 46_C_NA_35 47_C_NA_35 48_C_NA_35 49_C_NA_35 "H" "H" "H" "H" "H" "H" 50_C_NA_35 51_C_NA_35 52_C_NA_35 53_C_NA_35 54_C_NA 55_C_NA "H" "H" "H" "H" " " " " 56_C_NA 57_C_NA 58_C_NA 59_C_NA_19 60_C_NA_19 61_C_NA_19 " " " " " " "E" "E" "E" 62_C_NA_19 63_C_NA_19 64_C_NA_36 65_C_NA_36 66_C_NA_36 67_C_NA_36 "E" "E" "H" "H" "H" "H" 68_C_NA_36 69_C_NA_36 70_C_NA_36 71_C_NA_36 72_C_NA_36 73_C_NA "H" "H" "H" "H" "H" " " 74_C_NA 75_C_NA 76_C_NA 77_C_NA 78_C_NA 79_C_NA " " " " " " " " " " " " 80_C_NA 81_C_NA 82_C_NA 83_C_NA_37 84_C_NA_37 85_C_NA_37 " " " " " " "H" "H" "H" 86_C_NA_37 87_C_NA_37 88_C_NA_37 89_C_NA 90_C_NA 91_C_NA_38 "H" "H" "H" " " " " "H" 92_C_NA_38 93_C_NA_38 94_C_NA_38 95_C_NA_38 96_C_NA_38 97_C_NA_38 "H" "H" "H" "H" "H" "H" 98_C_NA 99_C_NA 100_C_NA 101_C_NA 102_C_NA 103_C_NA " " " " " " " " " " " " 104_C_NA 105_C_NA 106_C_NA_21 107_C_NA_21 108_C_NA_21 109_C_NA_21 " " " " "E" "E" "E" "E" 110_C_NA_21 111_C_NA_21 112_C_NA 113_C_NA 114_C_NA_23 115_C_NA_23 "E" "E" " " " " "E" "E" 116_C_NA_23 117_C_NA_23 118_C_NA_23 119_C_NA 120_C_NA 121_C_NA "E" "E" "E" " " " " " " 122_C_NA 123_C_NA 124_C_NA 125_C_NA 126_C_NA 127_C_NA " " " " " " " " " " " " 128_C_NA 129_C_NA 130_C_NA 131_C_NA 132_C_NA_39 133_C_NA_39 " " " " " " " " "H" "H" 134_C_NA_39 135_C_NA_39 136_C_NA_39 137_C_NA_39 138_C_NA_39 139_C_NA_39 "H" "H" "H" "H" "H" "H" 140_C_NA_39 141_C_NA_39 142_C_NA_39 143_C_NA 144_C_NA 145_C_NA "H" "H" "H" " " " " " " 146_C_NA 147_C_NA 148_C_NA 149_C_NA 150_C_NA 151_C_NA " " " " " " " " " " " " 152_C_NA 153_C_NA 154_C_NA_40 155_C_NA_40 156_C_NA_40 157_C_NA_40 " " " " "H" "H" "H" "H" 158_C_NA_40 159_C_NA_40 160_C_NA_40 161_C_NA_40 162_C_NA_40 163_C_NA_40 "H" "H" "H" "H" "H" "H" 164_C_NA 165_C_NA 166_C_NA 167_C_NA 168_C_NA 169_C_NA " " " " " " " " " " " " 170_C_NA 171_C_NA 172_C_NA 173_C_NA 174_C_NA 175_C_NA " " " " " " " " " " " " 176_C_NA 177_C_NA 178_C_NA 179_C_NA 180_C_NA 181_C_NA " " " " " " " " " " " " 182_C_NA 183_C_NA 184_C_NA 185_C_NA 186_C_NA_41 187_C_NA_41 " " " " " " " " "H" "H" 188_C_NA_41 189_C_NA_41 190_C_NA_41 191_C_NA_41 192_C_NA_41 193_C_NA_41 "H" "H" "H" "H" "H" "H" 194_C_NA_41 195_C_NA_41 196_C_NA_41 197_C_NA_41 198_C_NA_41 199_C_NA_41 "H" "H" "H" "H" "H" "H" 200_C_NA_41 201_C_NA 202_C_NA 203_C_NA 204_C_NA 205_C_NA "H" " " " " " " " " " " 206_C_NA 207_C_NA 208_C_NA 209_C_NA 210_C_NA_42 211_C_NA_42 " " " " " " " " "H" "H" 212_C_NA_42 213_C_NA_42 214_C_NA_42 215_C_NA_42 216_C_NA_42 217_C_NA_42 "H" "H" "H" "H" "H" "H" 218_C_NA_42 219_C_NA 220_C_NA 221_C_NA 222_C_NA 223_C_NA "H" " " " " " " " " " " 224_C_NA_22 225_C_NA_22 226_C_NA_22 227_C_NA_22 228_C_NA 229_C_NA_43 "E" "E" "E" "E" " " "H" 230_C_NA_43 231_C_NA_43 232_C_NA_43 233_C_NA_43 234_C_NA_43 235_C_NA_43 "H" "H" "H" "H" "H" "H" 236_C_NA_43 237_C_NA_43 238_C_NA_43 239_C_NA 240_C_NA 241_C_NA "H" "H" "H" " " " " " " 242_C_NA_24 243_C_NA_24 244_C_NA_24 245_C_NA_24 246_C_NA 247_C_NA "E" "E" "E" "E" " " " " 248_C_NA 249_C_NA 250_C_NA 251_C_NA 252_C_NA 253_C_NA " " " " " " " " " " " " 254_C_NA 255_C_NA 256_C_NA 257_C_NA 258_C_NA 259_C_NA " " " " " " " " " " " " 260_C_NA_20 261_C_NA_20 262_C_NA_20 263_C_NA_20 264_C_NA_20 265_C_NA_20 "E" "E" "E" "E" "E" "E" 266_C_NA_20 267_C_NA 268_C_NA 269_C_NA 270_C_NA 271_C_NA "E" " " " " " " " " " " 272_C_NA 273_C_NA_44 274_C_NA_44 275_C_NA_44 276_C_NA_44 277_C_NA_44 " " "H" "H" "H" "H" "H" 278_C_NA_44 279_C_NA_44 280_C_NA_44 281_C_NA_44 282_C_NA_44 283_C_NA "H" "H" "H" "H" "H" " " 284_C_NA 285_C_NA 286_C_NA 287_C_NA_45 288_C_NA_45 289_C_NA_45 " " " " " " "H" "H" "H" 290_C_NA_45 291_C_NA_45 292_C_NA_45 293_C_NA_45 294_C_NA_45 295_C_NA_45 "H" "H" "H" "H" "H" "H" 296_C_NA_45 297_C_NA 298_C_NA 299_C_NA 300_C_NA 301_C_NA "H" " " " " " " " " " " 302_C_NA 303_C_NA 304_C_NA 305_C_NA_46 306_C_NA_46 307_C_NA_46 " " " " " " "H" "H" "H" 308_C_NA_46 309_C_NA_46 310_C_NA_46 311_C_NA_46 312_C_NA_46 313_C_NA_46 "H" "H" "H" "H" "H" "H" 314_C_NA 315_C_NA_47 316_C_NA_47 317_C_NA_47 318_C_NA_47 319_C_NA_47 " " "H" "H" "H" "H" "H" 320_C_NA_47 321_C_NA_47 322_C_NA_47 323_C_NA_47 324_C_NA_47 325_C_NA_47 "H" "H" "H" "H" "H" "H" 326_C_NA_47 327_C_NA 328_C_NA 329_C_NA 330_C_NA 331_C_NA "H" " " " " " " " " " " 332_C_NA 333_C_NA 334_C_NA_48 335_C_NA_48 336_C_NA_48 337_C_NA_48 " " " " "H" "H" "H" "H" 338_C_NA_48 339_C_NA_48 340_C_NA_48 341_C_NA_48 342_C_NA_48 343_C_NA_48 "H" "H" "H" "H" "H" "H" 344_C_NA_48 345_C_NA_48 346_C_NA_48 347_C_NA_48 348_C_NA_48 349_C_NA_48 "H" "H" "H" "H" "H" "H" 350_C_NA_48 351_C_NA_48 352_C_NA_48 353_C_NA 354_C_NA 355_C_NA "H" "H" "H" " " " " " " 356_C_NA 357_C_NA_49 358_C_NA_49 359_C_NA_49 360_C_NA_49 361_C_NA_49 " " "H" "H" "H" "H" "H" 362_C_NA_49 363_C_NA_49 364_C_I 365_C_I "H" "H" " " " "

See also

dssp, stride, bounds.sse

Author

Barry Grant & Xin-Qiu Yao